PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03075.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 164aa    MW: 17732 Da    PI: 8.6183
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03075.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-1691141155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              ++ykGVr ++ +g+W AeI+dps    + r +lg f tae+Aa+a+++a+ ++ g
  Rsa1.0_03075.1_g00002.1  91 KKYKGVRKKP-SGKWSAEIWDPSL---KIRRWLGMFPTAEMAARAYDEAAAEFIG 141
                              59*****999.7*********943...4899*******************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.71E-1591131No hitNo description
SMARTSM003802.2E-2592156IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-1692143IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-2192142IPR001471AP2/ERF domain
PROSITE profilePS5103219.59992153IPR001471AP2/ERF domain
PfamPF008474.5E-992141IPR001471AP2/ERF domain
PRINTSPR003678.9E-793104IPR001471AP2/ERF domain
PRINTSPR003678.9E-7115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MDYSDNAPSD AQNPIAPRPP ALYLTRDQEH QIMVSALRQV ISNVGSDTSS SNGITGGALP  60
PPDAGPCPLC GITGCYGCAF QQRDNETKKE KKYKGVRKKP SGKWSAEIWD PSLKIRRWLG  120
MFPTAEMAAR AYDEAAAEFI GRISARRGQM NGRGVKELSG GGDD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00594DAPTransfer from AT5G67000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747053.11e-86PREDICTED: putative ethylene-responsive transcription factor ERF121
SwissprotQ38Q402e-69EF122_ARATH; Ethylene-responsive transcription factor ERF122
TrEMBLA0A078CJR82e-79A0A078CJR8_BRANA; BnaC04g37670D protein
STRINGBra034250.1-P3e-77(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67010.17e-53ERF family protein